| ردیف | عنوان مقاله | نام مجله | سال انتشار مقاله | نویسنده اول (مسئول ) | نویسنده دوم به بعد 
 | نوع ایندکس مجله | Q1 | 
| 1 | Comparison of the teaching clinical biochemistry in face-to-face and the flex-flipped classroom to medical and dental students: a quasi-experimental study from IRAN | BMC Medical Education | 2024 | correspond | 
 | Scopus/ PubMed | Q1 | 
| 2 | Epigenetic modulation of autophagy pathway by small molecules in colorectal cancer: a systematic review | Journal of Cancer Research and Clinical Oncology | 2024 | correspond | 
 | ISI, Scopus, PubMed, Embase | Q3 | 
| 3 | Rapamycin and/or valproic acid pre-treatment protects epidermal neural crest stem cells from oxygen glucose deprivation-induced oxidative stress through NRF2 pathway | Clinica Chimica Acta | 2024 | First author/ correspond | 
 | Scopus/ PubMed | Q1 | 
| 4 | Identifying clinically relevant transcriptional signatures and methylation profiles in the course, treatment and outcome of colorectal cancer | Frontiers in Oncology | 2024 | First author/ correspond | 
 | Scopus | Q2 | 
| 5 | Biosynthesis of palladium, platinum, and their bimetallic nanoparticles using rosemary and ginseng herbal plants: evaluation of anticancer activity | Scientific Reports | 2024 | correspond | 
 | Scopus/ PubMed | Q1 | 
| 6 | NRF1 or NRF2: Emerging role of redox homeostasis on PERK/NRF/autophagy mediated antioxidant in tumor and patient dependent chemo sensitivity | Preprints | 2024 | correspond | 
 | Scopus/ PubMed | 
 …. | 
| 7 | Valproic acid and/or rapamycin preconditioning protects hair follicle stem cells from oxygen glucose serum deprivation-induced oxidative injury via activating Nrf2 pathway | Molecular Biology Research Communications | 2024 | correspond | Third author | Scopus | Q4 | 
| 8 | Circulating Nucleic Acids in Colorectal Cancer: Diagnostic and Prognostic Value | Disease Markers | 2024 | correspond | 
 | PubMed, Embase, DOAJ | …. | 
| 9 | The effects of thymidylate synthase 3'UTR genotype on methylation of tumor-specific genes promoter in 22 colorectal cancer patients from southern Iran | Molecular Biology Research Communications | 2024 | correspond | 
 | Scopus | Q4 | 
| 10 | Examining the expression of low-density lipoprotein receptor (LDLR) and low-density lipoprotein receptor-related protein 6 (LRP6) genes in breast cancer cell lines | Molecular Biology Research Communications | 2024 | correspond | 
 | Scopus | Q4 | 
| 11 | Metformin as a Potential Therapeutic Agent in Breast Cancer: Targeting miR-125a Methylation and Epigenetic Regulation | International Journal of Molecular and Cellular Medicine | 2024 | correspond | 
 | Scopus | Q2 | 
| 12 | The Potential Role of Autophagy in Progression of Liver Fibrosis in Chronic Hepatitis B Patients Receiving Antiviral Treatment: A Brief Report | Iranian Journal of Medical Sciences | 2024 | correspond | 
 | Scopus | Q2 | 
| 13 | Melittin as an Activator of the Autophagy and Unfolded Protein Response Pathways in Colorectal HCT116 Cell Line | Iranian Biomedical Journal | 2024 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 14 | A review of recent advances in peptide-based anticancer therapeutic vaccines and nanovaccines in prostate cancer | International Journal of Peptide Research and Therapeutics | 2023 | 
 | * | Scopus/ PubMed | Q4 | 
| 15 | BAMLET (Bovine alpha-lactalbumin made lethal to tumor cells) inhibits autophagy flux and induces apoptosis via down-regulation of protein kinase CK1alpha and attenuation of the AKT/p-ss … | Iranian Journal of Basic Medical Sciences | 2023 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 16 | Salinomycin triggers human colorectal cancer HCT116 cell death by targeting unfolded protein responses and autophagy pathways | Iranian Journal of Colorectal Research, 11 (2) | 2023 | correspond | 
 | DOAJ | …. | 
| 17 | Stemness targeting of colorectal cell lines mediated by BAMLET and 5-Flourouracil | Biochemical and Biophysical Research Communications | 2023 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 18 | Where do liver injuries stand in the post-COVID-19 era? A review of the connection between long COVID and liver diseases | Iranian Journal of Colorectal Research, 11 (1) | 2023 | correspond | 
 | DOAJ | …. | 
| 19 | Novel Molecular Prognostic and Diagnostic Techniques in Colorectal Cancer | Iranian Journal of Colorectal Research, | 2022 | correspond | 
 | DOAJ | … | 
| 20 | Aqueous extract of Stevia rebaudiana (Bertoni) Bertoni abrogates death-related signaling pathways via boosting the expression profile of oxidative defense systems | Journal of Food Biochemistry | 2022 | 
 | * | Scopus/ PubMed | Q1 | 
| 21 | In silico Analysis of Single Nucleotide Polymorphisms Associated with MicroRNA Regulating 5-fluorouracil Resistance in Colorectal Cancer | Letters in Drug Design & Discovery | 2022 | correspond | 
 | Scopus/ PubMed | Q4 | 
| 22 | Cotransplant with pancreatic islet homogenate improved survival and long-term efficacy of islet transplant in streptozotocin-diabetic rats | Experimental and Clinical Transplantation: Official Journal of the Middle … | 2022 | correspond | * | …. | …. | 
| 23 | Stevia aquatic extract protects the pancreas from streptozocin (STZ) induced damage: A stereological study | Indian Journal of Experimental Biology (IJEB) | 2022 | 
 | * | … | … | 
| 24 | Evidence of histone modification affecting ARID1A expression in colorectal cancer cell lines | Gastroenterology and Hepatology From bed to Bench | 2022 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 25 | Statins in patients with COVID-19: a retrospective cohort study in Iranian COVID-19 patients | Translational medicine communications | 2021 | 
 | * | DOAJ | … | 
| 26 | ARID1A regulates E-cadherin expression in colorectal cancer cells: a promising candidate therapeutic target | Molecular Biology Reports | 2021 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 27 | Isolation Set-up and Characterization of cancer stem cells from HT29 colon cancer cell line | Iranian Journal of Colorectal Research | 2021 | FIRST author | 
 | DOAJ | … | 
| 28 | In Silico approach to predict the SARS-COV2 derived candidate MiRNAs as a potential antiviral therapy | Current Drug Therapy | 2021 | correspond | 
 | Scopus/ PubMed | Q3 | 
| 29 | Vitamin D receptor gene polymorphisms and the risk of metabolic syndrome (MetS): a meta-analysis | Endocrine, Metabolic & Immune Disorders-Drug Targets (Formerly Current Drug | 2021 | 
 | * | Scopus/ PubMed | Q3 | 
| 30 | Design and characterization of a recombinant immunotoxin for targeted therapy of breast cancer cells: In vitro and in silico analyses | Life Sciences | 2021 | correspond | 
 | Scopus/ PubMed | Q1 | 
| 31 | Role of apoptosis, autophagy, and the unfolded protein response in glioblastoma chemoresistance | Glioblastoma Resistance to Chemotherapy: Molecular Mechanisms and Innovative | 2021 | correspond | 
 | Scholar | … | 
| 32 | Rapid and Cost-Effective RNA extraction of rat pancreatic tissue | Journal of Visualized Experiments | 2020 | correspond | 
 | ISI, Scopus, PubMed | Q3 | 
| 33 | Stevia rebaudiana extract attenuate metabolic disorders in diabetic rats via modulation of glucose transport and antioxidant signaling pathways and aquaporin-2 expression in two extrahepatic tissues | Journal of Food Biochemistry | 2020 | correspond | 
 | ISI, Scopus | Q1 | 
| 34 | The effects of 17 Beta-Estradiol primed mesenchymal stem cells on the biology of co-cultured neutrophil | International Immunopharmacology | 2020 | 
 | * | ISI, Scopus, PubMed, Embase | Q1 | 
| 35 | Identifying a Novel Pathogenic Mutation in Exon 3 of ARID1A Gene in Colon Cancer | The Middle East Journal | 2020 | correspond | 
 | ISI, Scopus | Q3 | 
| 36 | Crosstalk between ER stress, unfolded protein response (UPR) and Wnt signaling pathway in cancer | Iranian of Journal Colorectal Research | 2020 | correspond | 
 | DOAJ | 
 | 
Dr.Mozhdeh Zamani
| ردیف | عنوان مقاله | نام مجله | سال انتشارمقاله | نویسنده اول (مسول ) | نویسنده دوم به بعد 
 | نوع ایندکس مجله | 
| 1 | Effects of 5-Fluorouracil on the Expression of Epigenetic Enzymes and Promoter Methylation of Selected Genes in Monolayer and Spheroid Cultures of Colorectal Cancer Cells | Pharmaceutical Sciences | 2024 | 
 | * | ESCI (ISI), Scopus, Embase IF: 1.4 | 
| 2 | Application of Cell Penetrating Peptides for Intracellular Delivery of Endostatin: A Computational Approach | Current Computer Aided Drug Design | 2024 | * | 
 | ISI, Scopus, PubMed, Embase IF: 1.5 Q3 | 
| 3 | In silico design and evaluation of a novel mRNA vaccine against BK virus: a reverse vaccinology approach | Immunologic research | 2023 | 
 | * | ISI, Scopus, PubMed, Embase IF: 3.3 Q3 | 
| 4 | Metformin enhances anti-cancer properties of resveratrol in MCF-7 breast cancer cells via induction of apoptosis, autophagy and alteration in cell cycle distribution | Biochemical and Biophysical Research Communications | 2023 | 
 | * | ISI, Scopus, PubMed, Embase IF: 2.5 Q3 | 
| 5 | ERMP1 Facilitates The Malignant Characteristics of Colorectal Cancer Cells through Modulating PI3K/AKT/beta-Catenin Pathway and Localization of GRP7 | Cell Journal | 2023 | * | 
 | ISI, Scopus, PubMed, Embase IF: 1.7 Q4 | 
| 6 | Expression and methylation status of BTG2, PPP1CA, and PEG3 genes in colon adenocarcinoma cell lines: Promising treatment targets | Gastroenterology and Hepatology from Bed to Bench | 2022 | 
 | * | Scopus, PubMed, Embase | 
| 7 | The Comparative Role of BAMLET and 5-Fluorouracil in Colorectal Cancer Cells by Targeting WNT/& Beta;-Catenin Pathway | International Journal of Cancer Management | 2022 | 
 | * | ESCI (ISI), Scopus IF: 0.4 | 
| 8 | Epigenetic Regulation of autophagy in coronavirus disease 2019 (COVID-19) | Biochemistry and Biophysics report | 2022 | 
 | * | ESCI (ISI), Scopus, PubMed, Embase, DOAJ IF: 2.3 | 
| 9 | In-silico selection of the signal peptides for high-level secretory expression of aflibercept in CHO cells | Minerva Biotechnology and Biomolecular Research | 2022 | * | 
 | ISI, Scopus IF: 0.7 Q4 | 
| 10 | Evaluation of Inflammatory Cytokine and Anti Helicobacter Pylori Antibodies in the Pathogenesis of Parkinson’s Disease | Middle East journal of digestive diseases | 2022 | 
 | * | Scopus, PubMed, Embase, DOAJ | 
| 11 | Evaluation of the Long-Term Survival in Non-Metastatic Young Breast Cancer Patients in South of Iran | Journal of Advances in Medical and Biomedical Research | 2022 | * | 
 | Scopus | 
| 12 | In Vitro Cytotoxicity and Apoptotic Assay of Eucalyptus globulus Essential Oil in Colon and Liver Cancer Cell Lines | Journal of gastrointestinal cancer | 2021 | 
 | * | ESCI (ISI), Scopus, PubMed, Embase IF: 1.6 | 
| 13 | Small extracellular vesicles (sEVs): discovery,functions, applications, detection methods and various engineered forms | Expert opinion on biological therapy | 2021 | 
 | * | PUBMED | 
| 14 | Sleeve Gastrectomy vs. Fundus Resection in Bariatric Surgery (Animal Study) | Shiraz E Medical Journal | 2020 | 
 | * | SCOPUS | 
| ردیف | عنوان مقاله | نام مجله | سال انتشار مقاله | نویسنده اول (مسول ) | نویسنده دوم به بعد 
 | نوع ایندکس مجله | 
| 1 | Investigation of rs328 polymorphism of lipoprotein lipase and rs1260326 polymorphism of glucokinase regulatory genes in individuals with type 2 diabetes in Yazd, Iran | Egyptian Journal of Medical Human Genetics, | 2025 | 
 | * | ESCI (ISI), Scopus, Embase, DOAJ | 
| 2 | Effect of 30-day Ramadan fasting on autophagy pathway and metabolic health outcome in healthy individuals | Molecular Biology Research Communications, | 2025 | * | 
 | ESCI (ISI), Scopus, PubMed | 
| 3 | Quercetin declines LPS induced inflammation and augments adiponectin expression in 3T3-L1 differentiated adipocytes SIRT-1 dependently | Molecular Biology Reports | 2024 | 
 | * | ESCI (ISI), Scopus, PubMed | 
| 4 | Targeting apoptosis and unfolded protein response: the impact of beta-hydroxybutyrate in clear cell renal cell carcinoma under glucose-deprived conditions | Molecular Biology Reports, | 2024 | * | 
 | ESCI (ISI), Scopus, PubMed | 
| 5 | Therapeutic potential of aquatic Stevia extract in alleviating endoplasmic reticulum stress and liver damage in streptozotocin-induced diabetic rats | Molecular Biology Report | 2024 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 6 | Gender-Specific effects of L-arginine supplementation on bone mineral density and trabecular bone volume in Sprague-Dawley rats; stereological study | BMC Complementary Medicine and Therapies | 2024 | * | 
 | ISI, Scopus, PubMed, Embase, DOAJ | 
| 7 | The modulation of autophagy and unfolded protein response by ent-kaurenoid derivative CPUK02 in human colorectal cancer cells | Molecular Biology Reports, | 2024 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 8 | Vitamin D supplementation affects bone marrow-derived mesenchymal stem cells differentiation into insulin-producing cells | Molecular Biology Reports | 2024 | 
 | * | ISI, Scopus, PubMed, Embase | 
| 9 | Evaluation of Antioxidant Effects of Coenzyme Q10 against Hyperglycemia-Mediated Oxidative Stress by Focusing on Nrf2/Keap1/HO-1 Signaling Pathway in the Liver of Diabetic Rats | Iranian Journal of Medical Sciences, | 2024 | 
 | * | ESCI (ISI), Scopus, PubMed, Embase, DOAJ | 
| 10 | Coenzyme Q10: A Key Antioxidant in the Management of Diabetes-Induced Cardiovascular Complications-An Overview of Mechanisms and Clinical Evidence | International Journal of Endocrinology | 2024 | * | 
 | ISI, Scopus, Embase, DOAJ | 
| 11 | Exploring the Therapeutic Potential of beta -Hydroxybutyrate (BHB) in Clear Cell Renal Cell Carcinoma: A Journey into Fat Browning, Autophagy, and Tumor Slimming | International Journal of Clinical Practice | 2024 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 12 | Importance of unfolded protein response modulation on diabetes management: a systematic review | Journal of Diabetes and Metabolic Disorders | 2024 | * | 
 | ESCI (ISI), Scopus, PubMed, Embase, DOAJ | 
| 13 | In Vitro and In Vivo Improvement of Islet Quality and Transplantation Successes following Islet Treatment with Biomaterials in Diabetic Rats | Journal of Diabetes Research, | 2023 | 
 | * | ISI, Scopus, PubMed, Embase, DOAJ | 
| 14 | Resveratrol promotes liver cell survival in mice liver-induced ischemia-reperfusion through unfolded protein response: a possible approach in liver transplantation | BMC Pharmacology and Toxicology | 2022 | 
 | * | ISI, Scopus, PubMed, Embase, DOAJ | 
Dr. Seyed Mohammad Shafiei
| ردیف | عنوان مقاله | نام مجله | سال انتشار مقاله | نویسنده اول (مسئول ) | نویسنده دوم به بعد 
 | نوع ایندکس مجله | 
| 1 | Differential effects of beta-hydroxybutyrate and alpha-ketoglutarate on HCT-116 colorectal cancer cell viability under normoxic and hypoxic low-glucose conditions: exploring the role of SRC, HIF1alpha, ACAT1, and SIRT2 genes | Molecular Genetics and Genomics | 2025 | * | 
 | ISI, Scopus, PubMed | 
| 2 | The effect of quercetin on adipogenesis, lipolysis, and apoptosis in 3T3‐L1 adipocytes: The role of SIRT1 pathways | Obesity Science & Practice | 2024/4 | * | 
 | ISI, Scopus, PubMed, | 
| 3 | Autophagy and the unfolded protein response shape the non-alcoholic fatty liver landscape: decoding the labyrinth | Metabolism | 2024/2/2 | * | 
 | ISI, Scopus, PubMed | 
| 4 | Bilirubin, an endogenous antioxidant that affects p53 protein and its downstream apoptosis/autophagy-related genes in LS180 and SW480 cell culture models of colorectal cancer | Biochemical and Biophysical Research Communications | 2023/9/10 | * | 
 | 
 | 
| 5 | The crosstalk between ubiquitin-conjugating enzyme E2Q1 and p53 in colorectal cancer: An in vitro analysis | Medical Oncology | 2023/6/9 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 6 | Bilirubin improves renal function by reversing the endoplasmic reticulum stress and inflammation in the kidneys of type 2 diabetic rats fed high-fat diet | Chemico-biological interactions | 2023/6/1 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 7 | Ameliorative effects of bilirubin on cell culture model of non-alcoholic fatty liver disease | Molecular Biology Reports | 2023/5 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 8 | Potential Anti-Inflammatory and Growth Inhibitory Effect of Cyrtopodion scabrum Extract on Colon Cancer; An in vivo Study | Asian Pacific Journal of Cancer Prevention: APJCP | 2023 | 
 | * | ISI, Scopus, PubMed, Embase | 
| 9 | Inhibitory effects of bilirubin on colonization and migration of A431 and SK-MEL-3 skin cancer cells compared with human dermal fibroblasts | Cancer Investigation | 2021/10/21 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 10 | Adrenomedullin increases cAMP accumulation and BDNF expression in rat DRG and spinal motor neurons | Iranian Journal of Basic Medical Sciences | 2021/7 | * | 
 | ISI, Scopus, PubMed, Embase | 
| 11 | Metformin modulates oncogenic expression of HOTAIR gene via promoter methylation and reverses epithelial–mesenchymal transition in MDA‐MB‐231 cells | Journal of Cellular Biochemistry | 2021/4 | 
 | * | ISI, Scopus, PubMed, Embase | 
| 12 | The methanol extract of red algae, Dichotomaria obtusata, from Persian Gulf promotes in vitro osteogenic differentiation of bone marrow mesenchymal stem cells | Journal of Pharmacy and Pharmacology | 2021/3/1 | 
 | * | ISI, Scopus, PubMed, Embase | 
| 13 | Adrenomedullin protects rat dorsal root ganglion neurons against doxorubicin-induced toxicity by ameliorating oxidative stress | Iranian Journal of Basic Medical Sciences | 2020/9 | * | 
 | PubMed, Embase | 
| 14 | 
 | International journal of radiation biology | 2020/5/3 | 
 | * | ISI, Scopus, PubMed, Embase |